HGG LabThis is a page depositing the genomics data resource of Coptis species genome. Currently, it includes Coptis chinensis (味连) genomic data.
Genomic data resources
Genomic Raw Data: The raw Illumina and Oxford nanopore sequencing data have been deposited in the Genome Sequence Archive (GSA) in National Genomics Data Center (NGDC) / China National Center for BioInformation (CNCB) under accession number CRA006182.
Genome Assembly: the genome assembly have been deposited in the Genome Warehouse (GWH) in National Genomics Data Center (NGDC) / China National Center for BioInformation (CNCB) under accession number GWHBHNG00000000.
Genome Annotation: the genome related annotation data can be obtained here, including gff, cds, and protein data files
Related publications
Liu YF#*, Wang B#, Shu SH#, Li Z#, Song C, Liu D, Niu Y, Liu JX, Zhang JJ, Liu HP, Liu ZG, Huang BS, Liu XY, Liu W, Jiang LP, Alami MM, Zhou YX, Ma YT, He XX, Yang YC, Zhang TY, Hu H, Barker MS, Chen SL*, Wang XK*, Nie J*. 2021. Analysis of the Coptis chinensis genome reveals the diversification of proberberine-type alkaloids. Nature Communications, 12, 3276. Paper link
Support or Contact
Any questions, please contact with Prof. Yifei Liu, liuyifei at hbtcm.edu.cn