HGG Lab
2025
79. Song J, Yuan C, Wang F, Lei D, Tian XF, Yang L, Li Z, …, Pei LL*, Hu ZG*, Liu YF*. 2025. Omics-based profiling and therapeutic potential of natural components in pan-Shennongjia medicinal herbs. Chinese Medicine, 20: 172.
78. Yuan C, Chen S, Wang F, Tian XF, Lei D, Zhang JJ, Liu YF*. 2025. Identification and functional analysis of terpene synthases revealing the sweet aroma formation in Chrysanthemum indicum var. aromaticum flowers. Industrial Crops & Products, 236: 121907.
77. Chen W, Yu Z, Leng L, …, Liu YF, …, Chen S*. 2025. Artificial Intelligence-Curated repository of gene-encoded natural diverse components from herbal medicines. The Innovation, 10.1016/j.xinn.2025.101011.
76. Yuan C, Wang F, Chen S, Lin ZJ, Deng R, Tian XF, Liao JH, Lei D, Zhang JJ*, Liu YF*. 2025. Identification and functional analysis of terpene synthase revealing the aroma variations among different Chrysanthemum indicum var. aromaticum ploidy germplasm. International Journal of Biological Macromolecules, 312: 143896.
75. Zhang L, Zhang K, Yang F, Dayananda B, Cao YP*, Hu ZG*, Liu YF*. 2025. Chromosome-level genome of Scolopendra mutilans provides insights into its evolution. Integrative Zoology, 20: 909-914.
74. Wang F, Yuan C, Deng Rui, Liu YF*. 2025. Multi-omics analysis reveals the pre-protective mechanism of Dendrobium flexicaule polysaccharide against alcohol-induced gasteic mucosal injury. International Journal of Biological Macromolecules, 291: 139191.
73. Wang F, Yuan C, Lu Y, Wu MJ, Wu HZ*, Liu YF*, Yang YF*. 2025. Glabridin inhibits proliferation and migration in hepatocellular carcinoma by regulating multi-targets. Journal of Ethnopharmacology, 338: 119022.
72. 杨澜, 裴柳玲*, 刘义飞*. 2025. 天麻次生代谢产物生物合成基因簇挖掘及其多样性形成机制比较研究. 中国中药杂志, 50: 4785-4796.
71. 陈诗, 祝瑞娟, 张景景, 刘义飞*. 2025. 神农香菊萜类合酶基因CiaTPS的克隆及原核表达分析. 湖北中医药大学学报, 27: 40-45.
70. 汪思雨, 李国风, 杨思雨, 陈士林, 刘迪*, 刘义飞*. 2025. 外源激素结合变温层积对黄连种子后熟与萌发的影响. 世界科学技术-中医药现代化, 27: 01.
69. 廖家豪, 张海琼, 秦志伟, 王旭, 刘义飞*, 张景景*. 2025. 野菊黄酮类化合物含量综合分析：种质差异性、组织分布和发育阶段变化. 世界科学技术-中医药现代化, 27: 1546-1554.
68. 陈诗, 袁冲, 赵彬凯, 鹿昊辰, 何妍, 张景景, 刘义飞*. 2025. 神农香菊萜类合酶基因CiaTPS1和CiaTPS2的克隆与功能分析. 植物科学学报, 网络首发.
67. 李伟, 朱明玉, 曾宇灵, 文萱, 黄楚彤, 法欣悦, 森林, 胡志刚*, 刘义飞*. 2025. 5种黄精属植物叶绿体基因组从头组装及系统发育研究. 世界科学技术-中医药现代化, 27: 01.
66. 赵彬凯, 陈诗, 廖家豪, 雷笛, 张景景, 刘义飞*. 2025. 野菊细胞色素P450基因家族全基因组鉴定及黄酮合酶基因分析. 世界科学技术-中医药现代化, 27: 01.
2024
65. Zhang K, Dayananda B, Liu YF, Hu ZG*, Zhang L*. 2024. Spatial and temporal variation of precipitation drives the genome size variation in Scolopendra in Chinese mainland. Ecology and Evolution, 14: e70580.
64. Mei Y, Yang L, Hai JM, Zhang K, Chi YJ, Hu ZG, Pei LL*, Liu YF*. 2024. Genetic diversity and construction of a core collection in Chinese Gastrodia elata germplasm resources. Scientia Horticulturae, 337, 113595.
63. Jiang LP, Chen S, Wang X, Sen L, Dong GQ, Song C*, Liu YF*. 2024. An improved genome assembly of Chrysanthemum nankingense reveals expansion and functional diversification of terpene synthase gene family. BMC Genomics, 25, 593.
62. Chi YJ, Liu CL, Liu W, Tian XF, Hu J, Wang B, Liu D*, Liu YF*. 2024. Population genetic variation and geographic distribution of suitable areas of Coptis species in China. Frontiers in Plant Science, 15: 1341996.
61. 杨思雨, 池玉洁, 张海琼, 梅洋, 汪思雨, 刘迪*, 刘义飞*. 2024. 基于广泛靶向代谢组学分析不同基原黄连根茎次生代谢物差异. 中国中药杂志, 49: 5441-5450.
60. 蒋莉萍, 徐宏峰, 程璐, 刘义飞*. 2024. 菊花脑WRKY基因家族鉴定与表达分析. 世界科学技术-中医药现代化, 26: 2374-2384.
59. 廖家豪, 陈诗, 刘迪, 张景景, 刘义飞*. 2024. 野菊尿苷二磷酸糖基转移酶（UGT）基因家族的全基因组鉴定和表达分析. 中国中药杂志, 49: 702-716.
58. 朱璐, 袁冲, 刘义飞*. 2024. 植物次生代谢产物生物合成基因簇研究进展. 植物学报, 59: 134-143.
2023
57. Wang X, Lei D, Zhu MY, Zhang HQ, Liao JH, Zhang JJ, Liu YF*. 2023. Phylogeny, genetics and ecological adaptation of the Chrysanthemum indicum complex. Medicinal Plant Biology, 2: 17.
56. Tian XF, Sang ZY, Lan ZH, Liu W, Feng Y, Hu J, Chen FJ, Liu YF*. 2023. Fine-Scale analysis of both wild and cultivated horned galls provides insight into their quality differentiation. BMC Plant Biology, 23: 426.
55. Hu J, Feng Y, Zhong HT, Liu W, Tian XF, Wang YH, Tan T, Hu ZG*, Liu YF*. 2023. Impact of climate change on the geographical distribution and niche dynamics of Gastrodia elata. PeerJ, 11: e15741.
54. Liu W, Tian XF, Feng Y, Hu J, Wang B, Chen SL, Liu D*, Liu YF*. 2023. Genome-wide analysis of bHLH gene family in Coptis chinensis provides insights into the regulatory role in benzylisoquinoline alkaloid biosynthesis. Plant Physiology and Biochemistry, 201: 107846.
53. Feng Y, Li B, Hu J, Liu W, Tian XF, Cheng YX, Lu S*, Liu YF*. 2023. Sustainable use of Chrysanthemum indicum var. aromaticum as value-added green materials in microemulsion hydrogels. ACS Sustainable Chemistry & Engineering, 11: 3820-3831.
2022
52. 刘微, 刘义飞, 陈士林, 刘迪*. 2022. 茉莉酸甲酯对黄连生物碱含量积累的影响. 世界中医药, 17: 1813-1818.
51. 刘义飞*, 胡志刚, 黄必胜, 陈士林. 2022. 组学技术在中药种质资源遗传评价与创新中的应用. 世界科学技术—中医药现代化, 24: 1315-1324.
50. 冯颖, 李彬, 周春苗, 叶利春, 卢山, 刘义飞*. 2022. 神农香菊茎叶黄酮与总酚的提取纯化和抗氧化活性研究. 世界科学技术—中医药现代化, 24: 1422-1432.
49. 刘微, 蒋莉萍, 池玉洁, 刘义飞, 陈士林, 刘迪*. 2022. 黄连WRKY基因家族鉴定及表达分析. 世界科学技术—中医药现代化, 24: 1369-1380.
48. 叶利春, 张景景, 石召华, 胡志刚, 郑国华, 陈士林, 刘义飞*. 2022. 七叶树属植物资源遗传评价与应用研究进展. 中药材, 45: 1008-1012.
47. 周春苗, 蒋莉萍, 董刚强, 刘义飞, 陈士林, 张景景*. 2022. 基于转录组测序研究不同海拔生境神农香菊的基因表达差异. 世界科学技术—中医药现代化, 24: 1356-1368.
46. 王旭, 胡鑫, 胡志刚, 刘义飞, 刘迪, 陈士林, 张景景*. 2022. 野菊花质量标志物（Q-marker）预测及其一测多评研究. 世界科学技术—中医药现代化, 24: 1343-1355.
45. 田徐芳, 胡娟, 桑子阳, 王志鸣, 刘义飞*. 五倍子生产“三要素”的生态适应性区划研究. 世界科学技术—中医药现代化, 24: 1433-1444.
44. 蒋莉萍, 周春苗, 钟浩天, 张景景, 刘义飞*, 张景景*. 2022. 菊花脑芳樟醇合酶基因CnTPS1的克隆与原核表达分析. 世界科学技术—中医药现代化, 24: 1391-1399.
43. 袁仁森, 王旭, 张景景, 森林, 董刚强, 刘义飞*. 2022. 神农香菊自然居群遗传变异评价研究及核心种质筛选. 世界科学技术—中医药现代化, 24: 1325-1334.
42. Ye L, Yang LL, Wang B, Chen G, Jiang LP, Hu ZG, Shi ZH*, Liu YF*, Chen SL*. 2022. The chromosome-level genome of Aesculus wilsonii provides new insights into terpenoid biosynthesis and Aesculus evolution. Frontiers in Plant Science, 13: 1022169.
41. Feng Y, Li B*, Yang L, Liu YF*. 2022. Co-amorphous delivery systems based on curcumin and hydroxycinnamic acids: Stabilization, solubilization, and controlled release. LWT – Food Science and Technology, 170: 114091.
40. Zhu L#, Liao JH#, Liu YF#, Zhou CM, Wang X, Hu ZG, Huang BS*, Zhang JJ*. 2022. Integrative metabolome and transcriptome analyses reveal the molecular mechanism underlying variation in floral scent during flower development of Chrysanthemum indicum var. aromaticum. Frontiers in Plant Science, 13: 919151.
39. Yao XH#, Wang SB#, Wang ZP#, Li DW, Jiang Q, Zhang Q, Gao L, Zhong CH, Huang H, Liu YF*. 2022. The genome sequencing and comparative analysis of a wild kiwifruit Actinidia eriantha. Molecular horticulture, 2: 13. Cover image paper.
2021
38. Liu YF#*, Wang B#, Shu SH#, Li Z#, Song C, Liu D, Niu Y, Liu JX, Zhang JJ, Liu HP, Liu ZG, Huang BS, Liu XY, Liu W, Jiang LP, Alami MM, Zhou YX, Ma YT, He XX, Yang YC, Zhang TY, Hu H, Barker MS, Chen SL*, Wang XK*, Nie J*. 2021. Analysis of the Coptis chinensis genome reveals the diversification of proberberine-type alkaloids. Nature Communications, 12: 3276. Paper link
37. Wang Xu, Zhang JJ, Liu ZG, Wang SB, Huang BS, Hu ZG, Liu YF*. 2021. Comparative transcriptome analysis of three chrysanthemums provides insights into flavonoid and terpenoid biosynthesis. Journal of Plant Biology, 64: 389-401. Paper link
36. Wang G*, Zhang XT, Herre EA, McKey D, Machado CA, Yu WB, Cannon CH, Arnold ML, Pereira RAS, Ming R, Liu YF, Wang YB, Ma D, Chen J*. 2021. Genomic evidence of prevalent hybridization throughout the evolutionary history of the fig-wasp pollination mutualism. Nature Communications, 12: 718. Paper link
2020
35. Liu M, X Hu, X Wang, JJ Zhang, XB Peng, ZG Hu*, YF Liu*. 2020. Constructing a core collection of the medicinal plant Angelica biserrata using genetic and metabolic data. Frontiers in Plant Science, 11: 600249. Paper link
34. Hu C, S Wang, BS Huang, HG Liu, L Xu, ZG Hu*, YF Liu*. 2020. The complete mitochondrial genome sequence of Scolopendra mutilans L. Koch, 1878 (Scolopendromorpha, Scolopendridae), with a comparative analysis of other centipede genomes. ZooKeys, 925: 73-88. Paper link
33. Hu X, M Liu, YF Liu, JJ Zhang, YW Tang, H Pei, HG Liu, SL Chen, WC Song*, ZG Hu*. 2020. A two-step approach for systematic identification and quality evaluation of wild and introduced Anemone flaccida Fr. Schmidt (Di Wu) based on DNA barcode and UPLC-QTOF-MS/MS. Analytical and Bioanalytical Chemistry, 412: 1807-1816. Paper link
2019
32. Wang SB, DW Li,XH Yao, QW Song,ZP Wang, Q Zhang, CH Zhong, YF Liu*, H Huang*. 2019. Evolution and diversification of kiwifruit mitogenomes through extensive whole-genome rearrangement and mosaic loss of intergenic sequences in a highly variable region. Genome Biology and Evolution, 11: 1192-1206. Paper link
31. 刘义飞, 胡志刚, 徐江, 陈士林*. 2019. 系统基因组学在中药研究中的应用. 中国中药杂志, 44: 891-898.
2018
30. Song C, YF Liu, AP Song, GQ Dong, HB Zhao, W Sun, S Ramakrishnan, Y Wang, SB Wang, TZ Li, Y Niu, JF Jiang, B Dong, Y Xia, SM Chen, ZG Hu, FD Chen*, SL Chen*. 2018. The Chrysanthemum nankingense genome provides insights into the evolution and diversification of chrysanthemum flowers and medicinal traits. Molecular Plant, 11: 1482-1491. Paper link
29. Wang SB, QW Song, SS Li, ZG Hu, GQ Dong, C Song, H Huang, YF Liu*. 2018. Assembly of a complete mitogenome of Chrysanthemum nankingense using Oxford nanopore long reads and the diversity and evolution of Asteraceae mitogenomes. Genes, 9: 547. Paper link
28. Wang ZP, SB Wang, DW Li, Q Zhang, L Li, CH Zhong, YF Liu*, H Huang*. 2018. Optimized paired-sgRNA/Cas9 cloning and expression cassette triggers high-efficiency multiplex genome editing in kiwifruit. Plant Biotechnology Journal, 16: 1424-1433. Cover image paper.
27. Pilkington SM, R Crowhurst, …, YF Liu, …, RJ Schaffer*. 2018. A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants. BMC Genomics, 19: 257.
26. Li L, H Pan, YF Liu, DW Li, Q Zhang, L Deng, MY Chen, and CH Zhong*. 2018. First report of Nigrospora sphaerica causing kiwifruit postharvest rot disease in China. Plant Disease, 102: 1666.
2017
25. Liu YF, DW Li, Q Zhang, C Song, CH Zhong, XD Zhang, Y Wang, XH Yao, ZP Wang, SH Zeng, Y Wang, YT Guo, SB Wang, XW Li, L Li, CY Liu, HC McCann, WM He, Y Niu, M Chen, LW Du, JJ Gong, PM Datson, E Hilario, and H Huang*. 2017. Rapid radiations of both kiwifruit hybrid lineages and their parents shed light on a two-layer mode of species diversification. New Phytologist, 215: 877-890.
24. Li WB, ZH Ding, MB Ruan, XL Yu, M Peng*, YF Liu*. 2017. Kiwifruit R2R3-MYB transcription factors and contribution of the novel AcMYB75 to red kiwifruit anthocyanin biosynthesis. Scientific Reports, 7: 16861.
23. Wang ZP, YF Liu*, L Li, DW Li, Q Zhang, YT Guo, SB Wang, CH Zhong, and H Huang*. 2017. Whole transcriptome sequencing of Pseudomonas syringae pv. actinidiae-infected kiwifruit plants reveals species-specific interaction between long non-coding RNA and Coding genes. Scientific Reports, 7: 4910.
22. Wang ZP, YF Liu*, DW Li, L Li, Q Zhang, SB Wang, and H Huang*. 2017. Identification of circular RNAs in kiwifruit and their species-specific response to bacterial canker pathogen invasion. Frontiers in Plant Science, 8: 413.
21. McCann HC, L Li, YF Liu, DW Li, H Pan, CH Zhong, EHA Rikkerink, MD Templeton, C Straub, E Colombi, PB Rainey, and H Huang*. 2017. Origin and evolution of the kiwifruit canker pandemic. Genome Biology and Evolution, 9: 932-944.
20. Zhang Y, CH Zhong, YF Liu, Q Zhang, XE Sun, and DW Li*. 2017. Agronomic trait variations and ploidy differentiation of kiwiberries in northwest China: implication for breeding. Frontiers in Plant Science, 8: 711.
2016
19. Ross Crowhurst, Yifei Liu, and Davide Scaglione. Chapter 8 / The Kiwifruit Genome. In: The Kiwifruit Genome (Raffaele Testolin, Hongwen Huang, Allan Ross Ferguson, eds.). Springer International Publishing, 2016, Switzerland, pp 101-114.
18. Dawei Li and Yifei Liu. Chapter 18 / Gene introgression from wild relatives. In: The Kiwifruit Genome (Raffaele Testolin, Hongwen Huang, Allan Ross Ferguson, eds.). Springer International Publishing, 2016, Switzerland, pp 237-248.
2015
17. Liu YF, DW Li, L Yan, and H Huang*. 2015. The microgeographical patterns of morphological and molecular variation of a mixed ploidy population in the species complex Actinidia chinensis. PLoS ONE, 10: e0117596.
16. Li WB#, YF Liu#, SH Zeng, G Xiao, G Wang, Y Wang*, M Peng*, and H Huang*. 2015. Gene expression profiling of development and anthocyanin accumulation in kiwifruit (Actinidia chinensis) based on transcriptome sequencing. PLoS ONE, 10: e0136439.
15. Yao XH, P Tang, ZZ Li, DW Li, YF Liu, and H Huang*. 2015. The first complete chloroplast genome sequences in Actinidiaceae: genome structure and comparative analysis. PLoS ONE, 10: e0129347.
14. Zhang Q, CY Liu, YF Liu, R VanBuren, XH Yao, CH Zhong, and H Huang*. 2015. High-density interspecific genetic maps of kiwifruit and the identification of sex-specific markers. DNA Research, 367-375.
2014
13. Huang H and YF Liu*. 2014. Natural hybridization, introgression breeding, and cultivar improvement in the genus Actinidia. Tree Genetics and Genomes, 10: 1113-1122.
12. Li DW, YF Liu, XW Li, JY Rao, XH Yao, and CH Zhong*. 2014. Genetic diversity in kiwifruit polyploid complexes: insights into cultivar evaluation, conservation, and utilization. Tree Genetics and Genomes, 10: 1451-1463.
11. Huang ZH, LF Guo, H Wang, HX Qu*, SM Ma, YF Liu, H Huang, YM Jiang. 2014. Energy status of kiwifruit stored under different temperatures or exposed to long-term anaerobic conditions or pure oxygen. Postharvest Biology and Technology, 98: 56-64.
10. Sun W, WJ Huang, ZN Li, C Song, D Liu, YL Liu, A Hayward, YF Liu, H Huang, and Y Wang*. 2014. Functional and evolutionary analysis of the AP1/SEP/AGL6 superclade of MADS-box genes in the basal eudicot Epimedium sagittatum. Annals of Botany, 113: 653-668.
2013
9. Sui LY, YF Liu, CH Zhong, and H Huang*. 2013. Geographical distribution and morphological diversity of red-fleshed kiwifruit germplasm (Actinidia chinensis Planchon) in China. Genetic Resources and Crop Evolution, 60: 1873-1883.
8. Qiu YJ, YF Liu, M Kang, GM Yi, and H Huang*. 2013. Spatial and temporal population genetic variation and structure of Nothotsuga longibracteata (Pinaceae), a relic conifer species endemic to subtropical China. Genetics and Molecular Biology, 36: 598-607.
2012
7. Guo J, YF Liu, YS Wang, JJ Chen, YH Li, H Huang, LJ Qiu*, and Y Wang*. 2012. Population structure of the wild soybean (Glycine soja) in China: implications from microsatellite analyses. Annals of Botany, 110: 777-785.
2011
6. Liu YF, DW Li, and H Huang. 2011. Cytotype variation in the natural populations of Actinidia chinensis complex in China. Acta Horticulturae, 913: 157-162.
2010
5. Liu YF, Y Wang, SB Liu and H Huang*. 2010. Allozyme variation of the endangered endemic plant Myricaria laxiflora: implications for conservation. Biochemical Systematics and Ecology, 38: 463-470.
4. Liu YF, YL Liu, and H Huang*. 2010. Genetic variation and natural hybridization among sympatric Actinidia species and the implications for introgression breeding of kiwifruit. Tree Genetics and Genomes, 6: 801-813.
2009
3. Liu YF, Y Wang, and H Huang*. 2009. Species-level phylogeographical history of Myricaria plants in the mountain ranges of western China and the origin of M. laxiflora in the Three Gorges mountain region. Molecular Ecology, 18: 2700-2712.
2. 刘义飞, 黄宏文*. 2009. 植物居群的基因流动态及其相关适应性进化的研究进展. 植物学报, 44: 351-362.
2006
1. Liu YF, Y Wang, and H Huang*. 2006. High interpopulation genetic differentiation and unidirectional linear migration patterns in Myricaria laxiflora (Tamaricaceae), an endemic riparian plant in the Three Gorges Valley of the Yangtze River. American Journal of Botany, 93: 206-215.